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| bipartite-package | Analysis of bipartite ecological webs. |
| addEmptyColToMatrix | Function "plotModuleWeb" |
| addEmptyRowToMatrix | Function "plotModuleWeb" |
| as.one.mode | Conversion of a network matrix |
| barrett1987 | Individuals caught in a pollination web in boreal Canada. |
| BC | Normalised degree, betweenness and closeness centrality |
| bezerra2009 | Individuals observed in a flower-visitation networks of oil-collecting bees in a Brazilian steppe. |
| bipartite | Analysis of bipartite ecological webs. |
| C.score | Calculates the (normalised) mean number of checkerboard combinations (C-score) in a matrix |
| CC | Normalised degree, betweenness and closeness centrality |
| cM | Function "computeModules" |
| compart | Detects compartments |
| computeModules | Function "computeModules" |
| confint | Examples for some analyses |
| degreedistr | Fits functions to cumulative degree distributions of both trophic levels of a network. |
| deleteModuleData | Function "computeModules" |
| dfun | Calculates standardised specialisation index d' (d prime) for each species in the lower trophic level of a bipartite network. |
| discrepancy | Calculates discrepancy of a matrix |
| drawModules | Function "plotModuleWeb" |
| elberling1999 | No. of visits in a pollination web of arctic-alpine Sweden |
| empty | Deletes empty rows and columns from a matrix. |
| extinction | Simulates extinction of a species from a bipartite network |
| genweb | Generate a random bipartite web |
| getModuleCoordinates | Function "plotModuleWeb" |
| H2fun | Specialisation of a bipartite web. |
| inouye1988 | A pollination network from the Snowy Mountains of New South Wales, Australia |
| intasymm | Examples for some analyses |
| intereven | Examples for some analyses |
| isCorrectModuleWebObject | Function "plotModuleWeb" |
| kato1990 | No. of individuals caught in a pollination web of a Japanese beech forest |
| kevan1970 | A pollination network from Northern Ellesmere Island, Canada |
| listModuleInformation | Function "listModuleInformation" |
| memmott1999 | Flower visitation network from a meadow near Bristol, UK |
| mgen | Examples for some analyses |
| mlik | Examples for some analyses |
| moduleWeb-class | Class "moduleWeb" |
| mosquin1967 | Flower visitation network from Melville Island, Northwest Territories, Canada |
| motten1982 | A spring flower visitation network from North Carolina, USA |
| ND | Normalised degree, betweenness and closeness centrality |
| nested | Calculates any of several measures of nestedness |
| nestedness | Calculates nestedness temperature of presence/absence matrices |
| netstats | Examples for some analyses |
| networklevel | Analysis of bipartite webs at the level of the entire network |
| nodespec | Calculates the node-based specialisation index |
| null.distr | Null model based on fitted marginal distribution |
| null.t.test | Compares observed pattern to random webs. |
| nullmodel | Generates null models for network analysis |
| olesen2002aigrettes | A flower visitation network from the Azores |
| olesen2002flores | Another flower visitation network from the Azores |
| ollerton2003 | ollerton2003 |
| PAC | Potential for Apparent Competition |
| plot.wine | Weighted-Interaction Nestedness Estimator |
| plotmat | Examples for some analyses |
| plotModuleWeb | Function "plotModuleWeb" |
| plotPAC | Function to draw a circular plot to visualise potential apparent competition (PAC) |
| plotweb | Visualize a bipartite interaction matrix (e.g. a foodweb) |
| plotweb2 | Visualize a tripartite interaction matrix (e.g. a tritrophic foodweb) |
| prepareWebForPlottingModules | Function "plotModuleWeb" |
| printoutModuleInformation | Function printoutModuleInformation |
| quant2bin | Examples for some analyses |
| readModuleData | Function "computeModules" |
| robustness | Robustness to species extinctions |
| Safariland | A pollination web from Argentina |
| schemske1978 | A flower visitation network from Urbana, IL, USA |
| second.extinct | Secondary extinctions in bipartite networks |
| shuffle.web | Shuffle web entries |
| slope.bipartite | Slope of extinction simulation |
| small1976 | A flower visitation network from a peat bog in Ottawa, Canada |
| sortmatr | Examples for some analyses |
| sortmatrext | Examples for some analyses |
| sortweb | Function to sort bipartite webs |
| specieslevel | Calculate various indices for network properties at the species level |
| swap.web | Creates null model for bipartite networks |
| togetherness | Calculates the number of identical co-presences and co-absences for species-on-islands |
| V.ratio | Calculates the variance-ratio as suggested by Schluter (1984) |
| vazarr | A pollination network. |
| vazcer | A pollination network. |
| vazllao | A pollination network. |
| vazmasc | A pollination network. |
| vazmasnc | A pollination network. |
| vaznull | Null model with constrained totals and connectance |
| vazquec | A pollination network. |
| vazquenc | A pollination network. |
| vazquez.example | Examples for some analyses |
| visweb | Plotting function to visualize a bipartite food web |
| web2edges | Conversion of a network matrix into a (weighted) edge list |
| wine | Weighted-Interaction Nestedness Estimator |